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    <th>Tractography</th>
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<ul class=toc>
  <li><a href='dwi.html'>Importing DW data</a></li>
  <ul>
    <li><a href='dwi.html#dwi'>The diffusion-weighted images</a></li>
    <li><a href='dwi.html#anat'>Anatomical images</a></li>
    <li><a href='dwi.html#dwscheme'>The diffusion-weighted gradient scheme</a></li>
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  <li><a href='preprocess.html'>Data pre-processing</a></li>
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    <li><a href='preprocess.html#mask'>Brain mask</a></li>
    <li><a href='preprocess.html#tensor'>Diffusion tensor images</a></li>
    <li><a href='preprocess.html#csd'>Constrained spherical deconvolution</a></li>
    <li><a href='preprocess.html#wm'>White matter mask</a></li>
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  <li><a href='roi.html'>ROI selection</a></li>
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    <li><a href='roi.html#types'>ROI types</a></li>
    <li><a href='roi.html#define'>Defining ROIs</a></li>
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  <li><a href='tracking.html'>Performing fibre-tracking</a></li>
  <ul>
    <li><a href='tracking.html#example'>A simple example using the diffusion tensor</a></li>
    <li><a href='tracking.html#include'>Using a inclusion ROI</a></li>
    <li><a href='tracking.html#exclude'>Using a exclusion ROI</a></li>
    <li><a href='tracking.html#mask'>Using an image as a ROI</a></li>
    <li><a href='tracking.html#csd'>Tracking using spherical deconvolution</a></li>
    <li><a href='tracking.html#wholebrain'>Whole brain tracking</a></li>
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